Welcome to The Triticeae Toolbox (T3)
This Confluence wiki houses the development conversation of The Triticeae Toolbox (T3) websites. T3 is the web portal for the data generated by the Triticeae Coordinated Agricultural Project (T-CAP), funded by the National Institute for Food and Agriculture (NIFA) of the United States Department of Agriculture (USDA). T3 contains SNP, phenotypic, and pedigree data from wheat and barley germplasm in the Triticeae CAP. More...
T3 Wheat T3 Barley T3 Oat T3 Sandbox T3 GitHub Repository
Meeting Notes
1/04/2017
Dubcovsky TILLING mutant database (review again next week)
- loading in T3 or GrainGenes
- using GOBII schema
report from GOBII workshop on 12/22
- integration of Flapjack with databases
- Flapjack use by T3 users
WheatIS - added phenotypes, GWAS results
T3/Oat - haplotag markers for newly added lines (need gbs file from google docs)
curator tools - trial annotations accept xlsx
trials and traits statistics - now works with one trial but could be improved with summary across trials and handling of sparse data in lm model
- provide summary with links to full tables
- provide button to show only selected lines
- if lm fails use simple means and show warning that lm can not be used.
Recent space activity
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Space contributors
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