Date

Attendees

Goals

Discussion items

TimeItemWhoNotes
 GrainGenesTanerupdate
 T3 loading Eduard's data 

review line names
2019_Diversity_90K - 1200 new markers, 56 accessions with no passport data (ask if revised or name problem)
2019_Diversity_GBS
JBrowse - could create a track with present absence for each SNP

 T3 tools 

Subset markers by polymorphisms - no problem with 1000 accessions, performance is only limited by the start and stop range
Knetminer - Keywan noticed a problem when linking with TO number (check if other TO are valid)
Download - use a permanent link for GBS files (do if simple)

 triticumbase/T3 
  • redesign home page
    which genotype experiments to load
    allow users to download genotype data (which formats) 
  • test loading of large genotype data files or use hdf5 with GOBII
 Genome Canada proposal T3 mirror in Canada -

Targeted and Useful Genomics for Barley and Oat (Tugboat)
https://www.genomecanada.ca/sites/default/files/2018_lsarp_-_successful_pre-application_list.pdf 

 WheatCAP Primer Design
Edwards 90K (not published), ask students if this data will be useful, how does this relate to wheatCAP parents
Shiny App (ask Noah for update)
create accounts so users can test features. 

Action items

  • @John Luc will ask Eduard for meeting in 2 weeks
  • Clayton L Birkett - given marker show which platform it was genotyped (90K platform or specific GBS genotype trial)