Date
Attendees
Gina Brown-Guedira, Eddie Lauer
Goals
Discussion items
| Time | Item | Who | Notes |
|---|---|---|---|
| 2017_WheatCAP | some of the parents are Ae. tauschii accessions | ||
| Variant Effect Predictor/SIFT | Clay | does Ensembl provide needed information? | |
| Select markers by variants | Clay | in development? | |
| Visualization (JBrowse) | do we need a track for each germplasm? SIFT, VEP | ||
| BLAST | links to genome viewer (BLAST tool, or precomputed table of links) |
Action items
- Clayton L Birkett select by variant should accept 2 or more lines
- Clayton L Birkett add gene annotation to 2017_WheatCAP
- Clayton L Birkett instruction for TASSEL to open 2017_WheatCAP
- Clayton L Birkett filter on feature type (ORF, exon, etc.) for VEP
- Clayton L Birkett add missing column to download page for variations.php
- Clayton L Birkett need 200bp on either side for primer design
- Clayton L Birkett make single track with variants for 2017_WheatCAP
- Clayton L Birkett on variations page add link to markers