2017-01-25 Meeting notes

Date

25 Jan 2017

Item	Who	Notes
Oat lines for genotyping	Clare	ranked on how much phenotypic data they have
wheat CAP meeting	Clay	should load tilling and recombination data (restricted?) for IWGSC RefSeq v1 restricted access to BLAST, JBrowse, Maps require email confirmation of data access agreement imputation, Flapjack, tutorials for applications expression data change to TGACv1 Stephen Pearce, https://wheat.pw.usda.gov/WheatExp/ Cristobal Uauy, http://www.wheat-expression.com/
KNetMiner	Clay	create link to public version? or use our own version without Arabidopsis reference?
Oat haplotag genotype data added for Cornell lines	Clay

Clayton L Birkett - when loading GBS data update allele conflicts
Clayton L Birkett - Cornell oat lines, publication uses IAXXXX for line names (2013 Elite Oat publication), update trial_code
JBrowse track for recombination data
Clayton L Birkett - email URGI to ask if Wheat CAP members can blast RefSeq v1, maker separate list of users
tutorials - BLAST, trials and traits table\
Wheat Expression UK - can we link to this? the WheatExp uses POST request to query that do not accept external links. The code is on github so we could create our own server or suggest changes that allow external links.
ask Keyway to make links for T3