2019-03-13 Meeting notes

Date

13 Mar 2019

Item	Who	Notes
GrainGenes	Taner	update
T3 loading Eduard's data		review line names 2019_Diversity_90K - 1200 new markers, 56 accessions with no passport data 2019_Diversity_GBS JBrowse - could create track with present absence for each SNP
T3 tools		Subset markers by polymorphisms - no problem with 1000 accessions, performance is only limited by the start and stop range Knetminer - Keywan noticed a problem when linking with TO number Download - use permanent link for GBS files
triticumbase		redesign home page which genotype experiments to load allow users to download genotype data (which formats)
T3		convert big VCF to hdf5 (check with GOBII) ask Star (ask second) ask Lucas what is largest VCF that I can load (ask first) check Akanov JBrowse (which data)
WheatCAP		Primer Design Edwards 90K (not published), ask students if this data will be useful, how does this relate to wheatcap parents Shiny App (ask Noah for update) create accounts so users can test features.