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Date 23 Mar 2016
Attendees Goals Discussion items Time Item Who Notes report on what analysis functions work across all genotype calls available versus just on the consensus allele calls, and also on how easily we can adapt functions to showing nucleotide information rather than Illumina A/B.
works with genotype experiments Ouput Format Select Wizard Lines by Properties Lines by Phenotype Lines by Haplotype No Illumina Lines by Genotype Experiment Yes Traits and Trials Markers Yes Genetic Map Clear selection Analyze Cluster Lines by Genotype No Cluster 3D pam No Cluster 3D hclust No Selection Index Traits and Trials Histogram Traits and Trials Box Plot Traits and Trials Table Canopy Spectral Reflectance GWAS Yes Compare Trials Track Alleles through Pedigree Parse Purdy Pedigree Allele Data Conflicts No Illumina BLAST Yes Haplotype Data No Illumina Download Genotype and Phenotype Data Yes all types Imputed Yes VCF SNPS and sequenc Yes Marker Annotation Yes
Action items
