Date

Attendees

Goals

Discussion items

TimeItemWhoNotes
genotype experiments, output formatJean-Luc
  • report on what analysis functions work across all genotype calls available versus just on the consensus allele calls, and also on how easily we can adapt functions to showing nucleotide information rather than Illumina A/B.
 systemClay
  • website passed vulnerability scan
  • received quote for UPS connection
 OatClay
  • loaded Haplotag data on T3 but waiting for a fix for marker naming error
 T3 gereralClay, Clare
  • changed link for traits (plant ontology) from Gramene to Planteome
 works with genotype experimentsOuput Format
Selection  
Lines by HaplotypeNoIllumina
Lines by Genotype ExperimentYes 
MarkersYes 
   
Analyze  
Cluster Lines by GenotypeNo 
Cluster 3D pamNo 
Cluster 3D hclustNo 
GWASYes 
Allele Data ConflictsNoIllumina
BLASTYes 
Haplotype DataNoIllumina
   
Download  
Genotype and Phenotype DataYesall types
ImputedYesVCF
SNPS and sequenceYes 

Action items

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