Overview
GBS Database Schema
- GBS DatabaseSchema Image
- based on The Genomic Diversity and Phenotype Data Model (GDPDM)
sample submission interface fields and database schema
QC Scripts
"SampTrack" C# windows program to interface with GBS for setting up pools etc.
- manual SQL queries (supplement "samptrack")
- desire to have functionality build in
- SampTrack screenshots and notes
redmine project management
- Project initiation
- create project in redmine
- Individual plate tracking
- Can note if a plate failed somewhere in the process and link it to the redone plate.
- Can link billing information so we know if the plate has been paid for
- I don't like:
- Having to click through so many screens to get to the next sample in a project
- Hard to look at samples in groups, like all of the samples on a flowcell
Data Distribution
- manual
- either "hapmap table" by email, or dropbox or physical hard drive if client wants raw data
billing
*invoicing handled through LSCLC cores LIMS
Theresa's comments on GBS billing issues
Misc operations
- Configure new adapter plate configurations