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Table listing all compilers and MPI applications on Matrix
Application | Version number | Group's application | location (path, on Matrix) | Compiled with, if relevant) (info from ChemIT) | mpi, if relevant | Other notes | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
amber | 10 | Pawel | /software/amber10 | ? | ? | ||||||||
amber | 14 | Pawel | /software/amber14 | intel_2015.0.090 | mpich2-1.4.1p1-intel_2015.0.090 | ||||||||
gamess | 2009 | Czarek | /software/gamess2009 | ? | ? | works using 8 cores per node but cannot use 20 cores on new nodes | |||||||
gaussian | g03 E.01 | Adam | /software/g03 | ? | N/A | ||||||||
gaussian | g09 C.01 | Jorge | /software/g09-C.01 | ? | N/A | ||||||||
gaussian | g09 D.01 | Jorge | /software/g09 linked to /software/g09-D.01 | PGI 14.7 | N/A | Default g09 version. Profile setting: setenv g09root "/software" setenv GAUSS_SCRDIR "/scratch" source $g09root/g09/bsd/g09.login | |||||||
gcc compliergcc compiler | 4.47 | Czarek | /usr/bin/gcc | N/A | |||||||||
gromacs | 4.5.4 | Gia | /software/gromacs-4.5.4 | ? | ? | ||||||||
gromacs | 5.0 | Gia | /software/gromacs-5.0-intel | intel_2015.0.090 | openmpi-1.6.5-intel_2015.0.090 | GSL | 1.9 | Maciej | /software/gsl-1.9 | ||||
Intel compiler | 11.1 20100414 | Yi | /software/intel | N/A | |||||||||
Intel compiler | 2015.0.090 | Yi | /software/intel_2015.0.090 | N/A | mopac | MOPAC2012 | Pawel | /software/MOPAC2012 | profile Profile setting: setenv MOPAC_LICENSE source /software/mopac alias mopac '/software/mopac/MOPAC2012.exe' intel_2015.0.090/bin/ifortvars.csh intel64 | ||||
PGI compiler | 1.9-0 | mpich | 1.2.7p1 | Czarek | /software | /mpich/pgi | N/A | does not work with mpich2-1 | .2. | 7p1-gcc-4. | 1.2-33-sshgcc-4.1.2 | Program compiled with gcc4.47 and link with this mpi does not run | 1p1-intel |
mpich2 | 1.4 | Czarek | /software/mpich2-1.4 | ? | |||||||||
mpich2 | 1.4.1p1 | Czarek | /software/mpich2-1.4.1p1-intel | intel_2015.0.090 | |||||||||
openmpi | 1.4.3 | Czarek | /software/openmpi-1.4.3 | ? | |||||||||
openmpi | 1.6.5 | Czarek | /software/openmpi-1.6.5-intel | intel_2015.0.090 | PGI compiler | ||||||||
mpich | 1.9-02.7p1 | Czarek | /software/ | pgiN/A | does not work with mpich2 | mpich-1. | 42. | 1p1-intel||||||
pulchra | 304 | Czarek | /software/pulchra304 | ||||||||||
scwrl4 | 4 | Czarek | /software/scwrl4 | ||||||||||
wordom | 0.21 | Gia | /software/wordom_0.21 | ||||||||||
f77/g77 | /usr/bin/f77 | N | |||||||||||
mc | 4.7.0.2 | Czarek | /usr/libexec/mc/mc-wrapper.sh | ||||||||||
joe | 3.7 | Czarek | /usr/bin/joe |
7p1_intel-10.1_em64_ssh | intel-10.1? | works with amber10 only? |
This table shows which mpi works with each compiler
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intel_2015.0.090 | gcc4.47 | gfortran4.47 | intel_11.1 20100414 | PGI | |||
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mpich2-1.4.1p1-intel | yes | NO | NO | NO | NO | ||
mpich2-1.4 | yes (but gives some warnings about alignment 16 of symbol `mpifcmb4_') | yes | yes (-lmpl -lpthread is necessary) | yes | yes | ||
openmpi-1.6.5-intel | yes | yes | yes | NO | yes | ||
openmpi-1.4.3 | yes | yes | yes | yes | yes | ||
mpich-1.2.7p1_intel- | gcc-410.1 | .2-33-_em64_ssh | yes | NOyes | NO | yes | NO |