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Table containing node numbers (both old and new) and type. Snapshot information of each node's migration status.and hardware information.

See also

Node number
(new Matrix)
Old node number
Type
(vintage)
Migration status
Motherboard
Notes
BIOS version

Processor

(More info)

HyperthreadableMemoryLocal HD
headnode2014Supermicro X9DRW3.22 x E5-2603v2No32GB256SSD for main OS, RAID 1 for (2) 4TB notbackedup
m001(Yi He)GPUSupermicro  X8DTG-QF2.0b2 x X5650Yes12GB250GB
m002GPUSupermicro  X8DTG-QF2.0c2 x E5645Yes24GB250GB
m003GPUSupermicro  X8DTG-QF2.0b2 x E5645Yes24GB320GB
m004(Yi He)

m021

GPUSupermicro  X8DTG-QF2.0b2 x E5645Yes24GB320GB

m021

m064

 I
  
Tyan S5372V4.052 x E5335No4GB80GB
m022
m065
 I
  
Tyan S5372V4.052 x E5335No4GB80GB
m023
m066
 I
moved 10/14/14 
Tyan S5372V4.052 x E5335No4GB80GB
m024
m067
 I
  
Tyan S5372V4.052 x E5335No4GB80GB
m025
m068
 I
  
Tyan S5372V4.052 x E5335No4GB80GB
m026
m069
 I
  
Tyan S5372V4.052 x E5335No4GB80GB
m027
m070
 I
  
Tyan S5372V4.052 x E5335No4GB80GB
m028
m071
 I
  
Tyan S5372V4.052 x E5335No4GB80GB
m029
m072
 I
  
Tyan S5372V4.052 x E5335No4GB80GB
m030
m073
 I
moved 10/14/14 
Tyan S5372V4.052 x E5335No4GB80GB
m031
m074
 II
moved 10/14/14 
Asus DSBF-DE10062 x E5420No4GB80GB
m032
m075
 II
moved 10/14/14 
Asus DSBF-DE10062 x E5420No4GB80GB
m033
m076
 II
  
Asus DSBF-DE10062 x E5420No4GB80GB
m034
m077
 II
  
Asus DSBF-DE10062 x E5420No4GB80GB
m035
m078
 II
  
Asus DSBF-DE10062 x E5420No4GB80GB
m036
m079
 II
  
Asus DSBF-DE10062 x E5420No4GB80GB
m037
m080
 II
  
Asus DSBF-DE10062 x E5420No4GB80GB
m038
m081
 II
  
Asus DSBF-DE10062 x E5420No4GB80GB
m039
m082
 II
  
Asus DSBF-DE10062 x E5420No4GB80GB
m040
m083
 II
  
Asus DSBF-DE10062 x E5420No4GB80GB
m041
m084
 II
  
Asus DSBF-DE10062 x E5420No4GB80GB
m042
m085
 II
  
Asus DSBF-DE10062 x E5420No4GB80GB
m043
m086
 II
  
Asus DSBF-DE10062 x E5420No4GB80GB
m044
m087
 II
  
Asus DSBF-DE10062 x E5420No4GB80GB
m045
m088
 II
  
Asus DSBF-DE10062 x E5420No4GB80GB
m046
m089
 II
  
Asus DSBF-DE10062 x E5420No4GB80GB
m047
m090
 II
  
Asus DSBF-DE10062 x E5420No4GB80GB
m048
m091
 II
  
Asus DSBF-DE10062 x E5420No4GB80GB
m049
m092
 II
  
Asus DSBF-DE10062 x E5420No4GB80GB
m050
m093
 II
  
Asus DSBF-DE10062 x E5420No4GB80GB
m051
m094
 II
  
Asus DSBF-DE10062 x E5420No4GB80GB
m052
m095
 II
  
Asus DSBF-DE10062 x E5420No4GB80GB
m053
m096
 II
  
Asus DSBF-DE10062 x E5420No4GB80GB
m054
m097
 II
  
Asus DSBF-DE10062 x E5420No4GB80GB
m055
m098
 I
  
Tyan S5372V4.052 x E5335No4GB80GB
m056
m099
 III
moved 10/13/14
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m057
m100
 III
 
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m058
m101
 III
 
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m059
m102
 III
 
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m060
m103
 III
 
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m061
m104
 III
 
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m062
m105
 III
 
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m063
m106
 III
 
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m064
m107
 III
 
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m065
m108
 III
 
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m066
m109
 III
 
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB

m067

m110
 III
 
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m068
m111
 III
 
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m069
m112
 III
 
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m070
m113
 III
 
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m071
m114
 III
 
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m072
m115
 III
 
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m073
m116
 III
 
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m074
m117
 III
 
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m075
m118
 III
 
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m076
m119
 III
moved 10/14/14
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m077
m120
 III
 
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m078
m121
 III
 
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m079
m122
 III
 
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m080
m123
 III
 
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m081
m124
 III
 
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m082
m125
 III
 
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m083
m126
 III
 
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m084
m127
 III
 
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m085
m128
 III
 
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m086
m129
 III
 
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m087
m130
 III
 
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m088
m131
 III
 
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m089
m132
 III
 
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m090
m133
 III
 
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m091
m134
 III
 
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m092
m135
 III
 
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m093
m136
 III
 
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m094
m137
 III
 
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m095
m138
 III
 
Asus Z8PE-D121201
 
2 x E5620Yes12GB320GB
m001m139 GPUnot to be migrated until GPU testing doneused only by Yi He as workstation with GPU2 x X5650Yes12GB250GBm002m140 GPUmoved 10/14/14used only as CPU nodem003m141 GPUmoved 10/14/14used only as CPU node2 x E5645Yes24GB320GBm004m142 GPUmigrated to ChemCluster for Lulu testingcurrently connected to Chem Cluster for GPU testing by Lulu2 x E5645Yes24GB320GB
2 x E5645Yes24GB250GB
m096
m143
 IV
 
Supermicro X8DTT2.1b
 
2 x E5645Yes24GB320GB
m097
m144
 IV 
 
Supermicro X8DTT2.1b
 
2 x E5645Yes24GB320GB
m098
m145
 IV
 
Supermicro X8DTT2.1b
 
2 x E5645Yes24GB320GB
m099
m146
 IV
 
Supermicro X8DTT2.1b
 
2 x E5645Yes24GB320GB
m100
m147
 IV
 
Supermicro X8DTT2.1b
 
2 x E5645Yes24GB320GB
m101
m148
 IV
 
Supermicro X8DTT2.1b
 
2 x E5645Yes24GB320GB
m102
m149

 IV

moved 10/13/14
Supermicro X8DTT2.1b
 
2 x E5645Yes24GB320GB
m103
m150
 IV
 
Supermicro X8DTT2.1b
 
2 x E5645Yes24GB320GB
m104
m151
 IV 
 
Supermicro X8DTT2.1b
 
2 x E5645Yes24GB320GB
m105
m152
 IV 
moved 10/14/14
Supermicro X8DTT2.1b
 
2 x E5645Yes24GB320GB
m106
m153
 IV
 
Supermicro X8DTT2.1b
 
2 x E5645Yes24GB320GB
m107
m154
 IV
 
Supermicro X8DTT2.1b
 
2 x E5645Yes24GB320GB
m108
N/A
2014
On new cluster from start
Supermicro X9DRT-HF3.2
 
2 x E5-2670v2Yes64GB500GB
m109
N/A
2014
On new cluster from start
Supermicro X9DRT-HF3.2
 
2 x E5-2670v2Yes64GB500GB
m110
N/A
2014
On new cluster from start
Supermicro X9DRT-HF3.2
 
2 x E5-2670v2Yes64GB500GB
m111
N/A
2014
On new cluster from start
Supermicro X9DRT-HF3.2
 
2 x E5-2670v2Yes64GB500GB
m112
N/A
2014
On new cluster from start
Supermicro X9DRT-HF3.2
 
2 x E5-2670v2Yes64GB500GB
m113
N/A
2014
On new cluster from start
Supermicro X9DRT-HF3.2
 
2 x E5-2670v2Yes64GB500GB
m114
N/A
2014
On new cluster from start
Supermicro X9DRT-HF3.2
 
2 x E5-2670v2Yes64GB500GB
m115
N/A
2014
On new cluster from start
Supermicro X9DRT-HF3.2
 
2 x E5-2670v2Yes64GB500GB
ApplicationsVersion
amber10 & 14
gamess2009
gaussiang03-E.01 & g09-C.01 & g09-D.01
gcc compiler4.47
gromacs4.5.4 & 5.0
gsl1.9
intel compiler2015.0.090
matlab2015a
mopac2012
mpich1.2.7p1_intel-10.1_em64_ssh
mpich21.4 & 1.4.1p1-intel_2015.0.090
openmm4.0
openmpi1.4.3 & 1.6.5-intel_2015.0.090
pgi1.9-0
pulchra304
scwrl44
shiftx2v107
SPARTA+v2.60
wordom0.21

 

Maintenance records:

3/16/2016 - updated BIOS on m108-m115 from 3.0a to 3.2. Synology RS3412xs updated from DSM 5.2-5644 Update 2 to DSM 5.2-5644 Update 5. - meh26

3/16/2016: Lulu: There are no security updates available via YUM. FSCK run no errors found.

6/9/2016: Lulu: No firmware update from Michael. There are no security updates available via YUM. FSCK run no errors found. Synology firmware got updated. We did UPS test. After 15 minutes, Synology went to safe mode and Matrix head node got to shutdown properly and battery was about %67 full. We found one switch has a few links problem, which makes m101 cannot boot and m102 lost network connection from head node. Ticket created:

  • INC000001693005 Scheraga - Matrix node m101 both network link on the switch are not working

9/14/2016: Lulu: No firmware update from Michael. There are no security updates available via YUM. No FSCK. Synology firmware got updated. m102 cannot boot. It looks like network switch or cable problem.

12/14/2016: Lulu: No firmware update from Michael. There are no security updates available via YUM. Forced FSCK. Synology firmware got updated. m102 cannot boot. It looks like network switch or cable problem.

3/22/2017: Lulu: No firmware update from Michael. There are no security updates available via YUM. No FSCK. Synology firmware got updated. starting iscsi takes long time (almost 2 minutes) and stopping iscsi also takes long time. We are not sure if it is related with Synology recent major update. We will watch for this when we do Synology update with Crane group.

6/14/2017: Lulu: No firmware update from Michael. Forced FSCK. Synology firmware got updated. m102 cannot boot. Looks like network issue.

12/13/2017: Lulu: No firmware update from Michael. Forced FSCK. Synology firmware got updated. m102 cannot boot. Looks like network issue. Head node one power supply is bad and making noise.

3/15/2018: Lulu: No firmware update from Michael. Synology firmware got updated. Headnode rebooted but pbs_server service was off and cannot be started (server database issue). I didn't wanto re-initialize the database by "pbs_server -t create". I decided to get the "serverdb" file recovered from EZbackup and it seems working.

6/28/2018: Lulu: No firmware update from Michael. Forced FSCK. Synology firmware got updated. m102 cannot boot. It is cable problem. m106/m107power supply is broken and need to be replace.

9/12/2018: Michael:

  1. Router replaced
  2. Scheraga Synology updated to DSM 6.2.1-23824.
  3. Nodes 56 to 95 should be updated from Asus Z8PE-D12 v1201 to v1401.  Nodes 108 to 115 should be updated from Supermicro X9DRT-HF v3.2 to v3.3.

9/12/2018: Lulu: m102 cannot boot. It is cable(both) or switch problem. m081 power may have issue.

12/12/2018: Michael: Scheraga Synology needs to be updated to 6.2.1-23824-2 from 6.2.1-23824-1. It has to be done manually according to Synology. Headnode BIOS should be updated from 3.2 to 3.3.

3/13/2019: Michael: upgraded the firmware on the Matrix router. Trying to use remote management tools to take it from 1.10.7 to 1.10.9 for the Edgerouter X.

3/13/2019: Lulu: Synology firmware upgrade. Forced fsck. m050 cannot boot.

10/23/2019: Lulu: Synology firmware upgrade. Forced fsck (including iscsi drives). m030,m050, m089, m115 cannot boot.

12/11/2019: Lulu: Synology firmware upgrade. m030,m039, m050, m085, m115 cannot boot.

3/11/2020,6/10/2020, 9/15/2020 Lulu: Synology firmware upgrade. Forced fsck. m030,m039, m050, m085, m115 cannot boot.