workflow high level overview
- Project Initiation
- Requires personal contact with lab director
- Charlotte or Sharon sets up project in redmine
- Sample submission: client goes to http://sorghumdiversity.maize.cornell.edu/ to get the required steps, and upload their information to attempt to get approved to send DNA samples
- Client sends DNA samples to the lab
- Client sets up customer registration at https://cores.lifesciences.cornell.edu/userdev/newuser.php
- DNA samples tested and if okay, Charlotte sets up a cost issue in redmine so Theresa knows what to bill.
- Customer is invoiced
- DNA samples begin moving through various lab steps; redmine updated at various steps
- SampTrac is used to update HTS database entries and create barcodes for DNA and library plates.
- Libraries are submitted for sequencing (sometimes more than once)
- Raw Data -> Data Files
- QC scripts run
- Pipelines change can be Tassel, or Fei Li's pipeline
- Data Interpretation
- need to know Biology / skilled analyst
- Data Distribution
- Data storage for X period of time
Overview
GBS Database Schema
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