3120: International Wheat Genome Sequencing Consortium (IWGSC)
Shotgun sequencing of Chinese Spring
assembled Illumina generated short reads using NRGene’s DeNovoMAGICTM2.0 assembler
QC will be finished April 2016
3127: Managing Crop Phenotype Data
will field book app work on paper white device?
iPlant projects interface
3127: Managing Crop Phenotype Data
3134: Oats
validation of imputation, impute GBS to Illumina
some lines have low imputation accuracy, could be a mistake in GBS or stock
oat consensus map Chiffon et al 2016
Wheat TCAP
new 5 year grant application
- hybrid wheat
- high throughput phenotyping UAV
- mutagenesis or transgenic
- gene editing CRSPR-CAS9 gene editing
validation of candidate gene
- fine mapping
- QTL cloning
website with map location of yield components, similar process used by rice and in China
validation of complex trait (yield) may not work with QTL analysis and GWAS but helps to identify pathway
we are looking for yield potential, requires ideal conditions
BRAPI
put resources offered by each group on github, pull from github to T3 website
include certificate to prevent java errors in api
do we want to add jason-ld for BMS implimenation
use cases
- field book
- flapjack
Germplasm update api mcps
logon, need logout
hackathon May/July
AgBioData Workshop
iPlant to offer containers
divided into sub groups to discuss common data formats, etc
3125: Increasing Genetic Gains for Food Security in the Developing World