Presentations

Tuesday August 9th: http://cbsugobii05.tc.cornell.edu:6084/display/AG/Day+1+Presentations
Wednesday August 10th: http://cbsugobii05.tc.cornell.edu:6084/display/AG/Day+2+Presentations
Thursday August 11th: http://cbsugobii05.tc.cornell.edu:6084/display/AG/Day+3+Presentations

Day 1
July release of GOBII installed at three centers
Includes Core Database, Client Data Loader, Web Data Extractor 
Not included - BRAPI
KDCompute & KDExplorer will be included in next release of GOBII 
Installation uses ANSIBLE scripts
Marker Assisted Back Cross (MABC) and Parental Selection (PedVer) is in beta version of FlapJack will be included by FlapJack sometime in 2016 
BRAPI will be included in 2017 release

Day 2
Kelly discussed need for Decision Support system for the plant breeders who use GOBII
Interoperability breakout session
discussed ways to save results of analysis and run pipelines.
discussed need for funding developers for BRAPI
discussed packages that could provide interface to GOBII - flapjack, tassel, Optimas, Poncho's pipelines, Galaxy, R Shiney 

How this affects T3
GOBII is described as a Data Warehouse. The user interface will be provided by tools such as TASSEL, FlapJack, KDCompute, etc

  1. We could use GOBII as a backend database as the Buckler Lab is doing with TASSEL. This would mean loading our data into a new installation of GOBII and would improve our support of very large data sets.
  2. Both Tassel and Flapjack have command line interfaces to their tools. T3 could also implement command line tools and this would make it easier to do complicated workflows.
  3. Need to setup a meeting with Lucas, GOBII, and T3 in September to discuss how we can make a local installation of GOBII
     

 

 

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