Date
Attendees
Goals
Discussion items
| Time | Item | Who | Notes |
|---|---|---|---|
| Monday | iPTMnet | Cecilia Arighi |
|
| Protein Information Resource (PIR) | Andrew Nightingale |
| |
| TopAnat | Frederic Bastian |
| |
| Glycobiolog | Jean-Philippe Gourdine |
| |
| Cellosaurus | Amos Bairoch |
| |
| OBO Foundry | Lynn Schriml |
| |
| ontology mapping | Marie-Angelique Laporte |
| |
| Tuesday | WikiData | Andra Waagmeester | showed example of disease ontology in 100's of languages |
| protein2GO | |||
| rethinking databases | Ivan Erill | domain specific databases work as submission portals, then transfer to mainstream repository. specific databases will die when funding goes away. CollecTF | |
| Thursday | PhenoPackets | hierarchiacal JSON
| |
| subscription-based funding model | Tanya Berardini | Arabidopsis Information Resource (TAIR) lost funding, now subscription based |
Action items
- Clayton L Birkett - Marie-Angelique offered to help us convert from CO to TO
- Clayton L Birkett - should T3 be responsible for submitting data to NCBI/Ensembl, which data? This is normally the responsibility of the PI
- Clayton L Birkett - collaborate with Edward Marcotte, professor of biochemistry at The University of Texas at Austin, who is doing MassSpec on wheat. Our group studies the large-scale organization of proteins, essentially trying to reconstruct the 'wiring diagrams' of cells by learning how all of the proteins encoded by a genome are associated into functional pathways, systems, and networks. Such models let us better define the functions of genes, and to link genes to traits and diseases. See more on the Research page.
- Clayton L Birkett - what is the resolution/size of QTL's? - Poland's 2015 paper on the POPSEQ map is says that the average gap is less than 1 cM and the maximum gap is 30 cM