Cornell Food Safety Laboratory Microbial Genome Data

Scripts

Ion Torrent homopolymer correction script

Salmonella Phage Genomes

Salmonella phage FSL SP010 pseudogenome_SP010.GBK

Salmonella phage FSL SP012 pseudogenome_SP012.GBK

Salmonella phage FSL SP019 pseudogenome_SP019.GBK

Salmonella phage FSL SP029 pseudogenome_SP029.GBK

Salmonella phage FSL SP038 pseudogenome_SP038.GBK

Salmonella phage FSL SP049 pseudogenome_SP049.GBK

Salmonella phage FSL SP062 pseudogenome_SP062.GBK

Salmonella phage FSL SP063 pseudogenome_SP063.GBK

Salmonella phage FSL SP069 pseudogenome_SP069.GBK

Salmonella phage FSL SP099 pseudogenome_SP099.GBK

Salmonella phage FSL SP107 pseudogenome_SP107.GBK

Salmonella Genomes

Salmonella enterica serovar Rubislaw FSL A4-653

 - FSL A4-653 pseudogenome version May 2, 2010: Readme File     Gbk file for Pseudogenome

 - FSL A4-653 pseudogenome version Dec 2011: Readme File     Gbk file for Pseudogenome

Gbk file for ICEA4-653

pA4-653.gbk

phageRubislaw1.gbk

phageRubislaw2.gbk

phageRubislaw3.gbk

phageRubislaw4.gbk

Salmonella enterica serovar Adelaide

- FSL A4-669 pseudogenome version May 2, 2010: Readme File   Gbk file for Pseudogenome

phageAdelaide1.gbk

phageAdelaide2.gbk

Salmonella enterica serovar Alachua

- FSL R6-377 pseudogenome version May 2, 2010: Readme File    Gbk file for Pseudogenome

phageAlachua1.gbk

Salmonella enterica serovar Baildon

- FSL R6-199 pseudogenome version May 2, 2010: Readme File    Gbk file for Pseudogenome

SGI2_BAILDON.GBK

phageBaildon1.gbk

phageBaildon2.gbk

Salmonella enterica serovar Gaminara

- FSL A4-567 pseudogenome version May 2, 2010: Readme File   Gbk file for Pseudogenome

phageGaminara1.gbk

phageGaminara2.gbk

Salmonella enterica serovar Give

- FSL S5-487 pseudogenome version May 2, 2010: Readme File Give_1genome.gbk 

phageGive1.gbk

SGI2_GIVE.GBK

Salmonella enterica serovar Hvittingfoss

- FSL A4-620 pseudogenome version May 2, 2010: Readme File  Gbk file for Pseudogenome

SGI2_HVITTINGFOSS.GBK

phageHvittingfoss1.gbk

Salmonella enterica serovar Inverness

- FSL R8-3668 pseudogenome version May 2, 2010: Readme File  Gbk file for Pseudogenome

pR8-3668.gbk

ICE_R83668.gbk

phageInverness1.gbk

phageInverness1-b.gbk

phageInverness2.gbk

Salmonella enterica serovar Johannesburg

- FSL S5-703 pseudogenome version May 2, 2010: Readme File Gbk file for Pseudogenome

SGI2_JOHANNESBURG.GBK

phageJohannesburg1.gbk

phageJohannesburg2.gbk

phageJohannesburg3.gbk

phageJohannesburg4.gbk

Salmonella enterica serovar Minnesota

- FSL A4-603 pseudogenome version May 2, 2010: Readme File Gbk file for Pseudogenome

SGI2_MINNESOTA.GBK

Salmonella enterica serovar Mississippi

- FSL A4-633 pseudogenome version May 2, 2010: Readme File Gbk file for Pseudogenome

pA4-633.gbk

SGI2_MISSISSIPPI.GBK

SGI3.gbk

phageMississippi1.gbk

phageMississippi2.gbk

phageMississippi3.gbk

Salmonella enterica serovar Montevideo

- FSL S5-403 pseudogenome version May 2, 2010: Readme File Gbk file for Pseudogenome

pS5-403-1.gbk

pS5403_2.gbk

SGI2_MONTEVIDEO.GBK

TN7_MONTEVIDEO.GBK

phageMontevideo1.gbk

phageMontevideo2.gbk

phageMontevideo3.gbk

phageMontveideo4.gbk

Salmonella enterica serovar Senftenberg

- FSL A4-543 pseudogenome version May 2, 2010: Readme File Gbk file for Pseudogenome

TN7_SENFTENBERG.GBK

phageSenftenberg1.gbk

phageSenftenberg2.gbk

phageSenftenberg3.gbk

phageSenftenberg4.gbk

Salmonella enterica serovar Uganda

- FSL R8-3404 pseudogenome version May 2, 2010: Readme File Gbk file for Pseudogenome

SGI2_UGANDA.GBK

phageUganda1.gbk

phageUganda2.gbk

phageUganda3.gbk

phageUganda5.gbk

Salmonella enterica serovar Urbana

- FSL R8-2977 pseudogenome version May 2, 2010: Readme File Gbk file for Pseudogenome

pR8-2977.gbk

ICE_R8-2977.GBK

phageUrbana1.gbk

phageUrbana2.gbk

phageUrbana3.gbk

Salmonella enterica serovar Wandsworth

- FSL A4-590 pseudogenome version May 2, 2010: Readme File Gbk file for Pseudogenome

phageWandsworth1.gbk

phageWandsworth2.gbk

phageWandsworth3.gbk

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