Overview
This is a project to replace and enhance existing laboratory management systems supporting the Institute for Genomic Diversity's Genotyping By Sequencing (GBS) service.
IGD Please add overview description
Workflow
I'm thinking of a fairly high level text list of steps from project initiation to data distribution and billing - general terms like "run QC scripts" or "customer places online order"
- Project Initiation
- Requires personal contact with lab director
- xxx
- xxx
- Raw Data -> Data Files
- Pipeline can be Tassel, or Fei Li's pipeline
- Data Interpretation
- "manual" / "art"
- Data Distribution
Current Components
Overview
GBS Database Schema
sample submission interface fields and database schema
QC Scripts
"SampTrack" C# windows program to interface with GBS for setting up pools etc.
manual SQL queries (supplement "samptrack")
redmine project management
- Project initiation
- create project in redmine
Data Distribution
- create project in redmine
- how accomplished now?
billing
Misc operations
- Configure new adapter plate configurations
Map current components/workflow to new system(s)
Misc operations
- Configure new adapter plate configurations
- self service interface/upload?
- Custom DB queries