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| OpenMPI | http://www.open-mpi.org | The Open MPI Project is an open source Message Passing Interface implementation that is developed and maintained by a consortium of academic, research, and industry partners. |
| MPICH | http://www.mpich.org | MPICH is a high-performance and widely portable implementation of the Message Passing Interface (MPI) standard (MPI-1, MPI-2 and MPI-3). |
Compiler Families
| GNU | http://gcc.gnu.org | GNU C compiler and support files. |
| LLVM | http://llvm.org | LLVM compiler infrastructure. |
Python
| SciPy | http://www.scipy.org | SciPy is a Python-based ecosystem of open-source software for mathematics, science, and engineering |
| NumPy | http://www.numpy.org | Base N-dimensional array package |
IO Libraries
| Adios | http://www.olcf.ornl.gov/center-projects/adios | The Adaptable IO System (ADIOS). |
| HDF5/PHDF5 | http://www.hdfgroup.org/HDF5 | A general purpose library and file format for storing scientific data. |
| NetCDF | http://www.unidata.ucar.edu/software/netcdf | Fortran, C, and C++ libraries for the Unidata network Common Data |
| PnetCDF | http://cucis.ece.northwestern.edu/projects/PnetCDF | A Parallel NetCDF library |
| ScionLib | http://www.fz-juelich.de/ias/jsc/EN/Expertise/Support/Software/SIONlib/_node.html | Scalable I/O Library for Parallel Access to Task-Local Files. |
Serial/Threaded Libraries
| R | http://www.r-project.org | R is a language and environment for statistical computing and graphics |
| GSL | http://www.gnu.org/software/gsl | The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting. There are over 1000 functions in total. |
| Metis | http://glaros.dtc.umn.edu/gkhome/metis/metis/overview | Serial Graph Partitioning and Fill-reducing Matrix Ordering. |
| OpenBLAS | http://www.openblas.net | An optimized BLAS library based on GotoBLAS2. |
| Plasma | https://bitbucket.org/icl/plasma | Parallel Linear Algebra Software for Multicore Architectures. |
| Scotch | http://www.labri.fr/perso/pelegrin/scotch | Graph, mesh and hypergraph partitioning library. |
| SuperLU | http://crd.lbl.gov/~xiaoye/SuperLU | A general purpose library for the direct solution of linear equations. |
Cluster HowTos:
- Login to the Cluster
- Loading Environments for Using Codes
- Submitting Jobs to the Cluster