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We are in the process of understanding this process in greater detail. Initial trials suggest that this sequence, as recommended by AWS, does not work. We have found that the snapshot will not proceed until the MySQL session holding the locks releases the locks or exits (which releases the locks). Read Replicas
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Resources
- Amazon Relational Database Service User Guide. This document has a fair amount to say about MyISAM tables–mostly warnings.
- AWS RDS FAQs. Search for MyISAM on the page)