| Time | Item | Who | Notes |
|---|
| | combine genotype experiments | Jean-Luc | - This could be done in the select lines by "genotype" page
- Limit combining to same platform (9K, 90K, GBS)
- In cases where lines duplicate, the name can be altered (_duplicate)
|
| | schedule dates of operating system upgrade | Clay Birkett, David Hane | install Ubuntu 14.04 on tcap machine - We need to allocate several days when no updates are allowed on production/backup machine
|
| | new TCAP hardware? | | |
| | genotype data loading | | - merging lines with 50% genotype conflicts
- Nick/Shiaoman (haplotag) will submit VCF file
- others?
|
| | harvesting QTLs | | - added link for JBrowse, marker, and trial count
- added trait description and ontology
- added QTLs from imputed genotypes
- added grouping by marker and gene
- how to combine p values? Do you through out disease trials? Do we need confidence interval for qtl loci?
|
| | problems with DNS and email on T3 machines | Clay Birkett, David Hane | - email still not delivered to some sites because of USDA limitations
|
